Occurences of the Boeckella genus (Copepoda, Calanoida) in New Caledonia

This dataset contains the occurences of the copepod genus Boeckella in New Caledonia gathered during an expedition in 2018 of the program "La Planète Revisitée". It is the second time this genus is recorded in New Caledonia and a new species has been found Boeckella sibleti sp. nov. This dataset is used in the article by Royaux et al., 2023. It is a subset of Coline Royaux's PhD thesis dataset which will be updated throught the research and validation process. Partial COI (Cytochrome Oxidase I) gene of 74 individuals of Boeckella spinogibba and 10 individuals of Boeckella sibleti has been sequenced with Sanger method. Original AB1 data files for these sequenced are shared along with tabular data files on individuals (containing e.g. sample ID, species and sex identified, NCBI GenBank accession for cleaned sequences and used primers for amplifications), occurences (containing e.g. sample ID, species identified, French Natural History Museum (MNHN) collection ID), samples (containing e.g. sample type, location ID, sampling date, sampler name), locations (containing e.g. other names of the location, coordinates in decimal degrees WGS84) and DNA extractions (containing e.g. extraction date, laboratory operator) and fasta files with all found haplotypes sequences and primer used. DNA extraction (https://dx.doi.org/10.17504/protocols.io.j8nlk4x7wg5r/v1) and PCR (dx.doi.org/10.17504/protocols.io.261ge4y4jv47/v2) protocols are available on protocols.io. Sequence cleaning workflow is available on Galaxy at https://usegalaxy.fr/u/coline_royaux/w/sanger1--from-ab1-to-aligned-fasta-imported-from-uploaded-file and history retracing data cleaning steps at https://usegalaxy.fr/u/coline_royaux/h/automatic-boeckella-nc-data-cleaning-1.